PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON68423.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 465aa MW: 52120.3 Da PI: 9.3247

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON68423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PON68423.1 44 YVCEICNQGFQRDQNLQMHRRRH 66 9*********************9 PP
2	zf-C2H2	13.7	0.00019	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ PON68423.1 123 WVCHRCSKAYAVHSDFKAHLKTC 145 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDNSNNNNNS NNNNKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ 60 MHRRRHKVPW KLLKRESPAG VVRKRVFVCP EPTCLHHDPC HALGDLVGIK KHFRRKHSNH 120 KQWVCHRCSK AYAVHSDFKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CTMGRLRSES 180 QALQPAACLS RTASSPSPSS TDTNLAMPIN TTTSNNPSDT TTTTTALVIL STTPSPQNPI 240 LSKTRTSNSI NPRFHNLDLQ LSTTTTTTMS NENQSSPKKD INHHENDQYS TQLQLSIGSS 300 DCGEKNDLSN NNHKCSPRES MMSSTTAAND NNVDKTMRVM KEEAREQLRV AMAEKRYAEE 360 ARQQAKRQIE LAEQEFANAK RIRQQAQAEL DKAQALKEHA VKQLNSTLLQ LTCHACKHHF 420 HHARSTLSCI ITTSSSDCQT LENGRSNNTV LPIRDRLGKS AISPS

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDNSNNNNNS NNNNKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ  60
MHRRRHKVPW KLLKRESPAG VVRKRVFVCP EPTCLHHDPC HALGDLVGIK KHFRRKHSNH  120
KQWVCHRCSK AYAVHSDFKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CTMGRLRSES  180
QALQPAACLS RTASSPSPSS TDTNLAMPIN TTTSNNPSDT TTTTTALVIL STTPSPQNPI  240
LSKTRTSNSI NPRFHNLDLQ LSTTTTTTMS NENQSSPKKD INHHENDQYS TQLQLSIGSS  300
DCGEKNDLSN NNHKCSPRES MMSSTTAAND NNVDKTMRVM KEEAREQLRV AMAEKRYAEE  360
ARQQAKRQIE LAEQEFANAK RIRQQAQAEL DKAQALKEHA VKQLNSTLLQ LTCHACKHHF  420
HHARSTLSCI ITTSSSDCQT LENGRSNNTV LPIRDRLGKS AISPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	20	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-111	C2H2 family protein