PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON68423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | C2H2 | ||||||||
Protein Properties | Length: 465aa MW: 52120.3 Da PI: 9.3247 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.5e-06 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PON68423.1 44 YVCEICNQGFQRDQNLQMHRRRH 66 9*********************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ PON68423.1 123 WVCHRCSKAYAVHSDFKAHLKTC 145 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence |
MDNSNNNNNS NNNNKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ 60 MHRRRHKVPW KLLKRESPAG VVRKRVFVCP EPTCLHHDPC HALGDLVGIK KHFRRKHSNH 120 KQWVCHRCSK AYAVHSDFKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CTMGRLRSES 180 QALQPAACLS RTASSPSPSS TDTNLAMPIN TTTSNNPSDT TTTTTALVIL STTPSPQNPI 240 LSKTRTSNSI NPRFHNLDLQ LSTTTTTTMS NENQSSPKKD INHHENDQYS TQLQLSIGSS 300 DCGEKNDLSN NNHKCSPRES MMSSTTAAND NNVDKTMRVM KEEAREQLRV AMAEKRYAEE 360 ARQQAKRQIE LAEQEFANAK RIRQQAQAEL DKAQALKEHA VKQLNSTLLQ LTCHACKHHF 420 HHARSTLSCI ITTSSSDCQT LENGRSNNTV LPIRDRLGKS AISPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 20 | KRKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-111 | C2H2 family protein |