PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON67504.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

AP2

Protein Properties

Length: 430aa MW: 48535 Da PI: 9.0627

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON67504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.4	3.1e-12	92	148	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g PON67504.1 92 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 148 789****************88887786625555.******************98 PP
2	AP2	50.5	5e-16	191	242	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PON67504.1 191 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 242 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MNQLSLAVSH KENKRPDMEM TVKSELCPGK RHVCLFEGDN NATIAKCVKR RRRYSTAVSL 60 SCKDQQGEDQ QVDQSATTTT TTTTTTTVKR SSRFRGVSRH RWTGRYEAHL WDKGSWNPTQ 120 RKKGKQGAYD EEESAARAYD LAALKYWGPS TFTNFLVSEY EKEIEIMKNV TKEEYLASLR 180 RRSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYSTQEEAA HAYDIAAIEY 240 RGINAVTNFD LSTYIRWLRP VSSSLGTQEP KPLTTATTTT TNSQPLTTSS YLIPGIEGRD 300 TSSFFHPNPF AVDDLEASKR QDILQRRQLQ TPTSPCSNSN SPSALGLLFK SSVFRDLVEK 360 NLCTENEGEE NGGKNLAQMK NDNFDMISFD GIGNMNYPGL ESHEESTLSF CNGRGGQSFW 420 NFPLNLSSFN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MNQLSLAVSH KENKRPDMEM TVKSELCPGK RHVCLFEGDN NATIAKCVKR RRRYSTAVSL  60
SCKDQQGEDQ QVDQSATTTT TTTTTTTVKR SSRFRGVSRH RWTGRYEAHL WDKGSWNPTQ  120
RKKGKQGAYD EEESAARAYD LAALKYWGPS TFTNFLVSEY EKEIEIMKNV TKEEYLASLR  180
RRSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYSTQEEAA HAYDIAAIEY  240
RGINAVTNFD LSTYIRWLRP VSSSLGTQEP KPLTTATTTT TNSQPLTTSS YLIPGIEGRD  300
TSSFFHPNPF AVDDLEASKR QDILQRRQLQ TPTSPCSNSN SPSALGLLFK SSVFRDLVEK  360
NLCTENEGEE NGGKNLAQMK NDNFDMISFD GIGNMNYPGL ESHEESTLSF CNGRGGQSFW  420
NFPLNLSSFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	126	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	8e-75	AP2 family protein