PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON65791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25429.8 Da PI: 6.8458 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.4 | 3.8e-08 | 10 | 42 | 12 | 44 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44 f +R++++ KKA EL C+ ev+++ + ++g PON65791.1 10 IFQRRKATLKKKAGELGARCNSEVCLVCYEPNG 42 5999*************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MVNTEKSSKI FQRRKATLKK KAGELGARCN SEVCLVCYEP NGGEVDVWPE DHAKAQSIIH 60 KYYSRLESSS NNTYKKRKEK LNLSDMLEKK MKKLEEQVGN QYHHHLDNNT SINTIDDVGF 120 PIVLPSLWDE ELDNLSGDSL MGLSQCLEAN IRKLDEKIEL LKQTSTQSRK EEHYSDLPPS 180 VLPHQYVSVI MPQVYASSSS HACSNILHGD IAPLHQLCNI SYTL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 4e-14 | M-type_MADS family protein |