PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON65764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26968 Da PI: 8.1273 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.8 | 1.3e-08 | 8 | 45 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + R++++ KKA EL + C+ ev+++ + + g++ ++ PON65764.1 8 YEGRKATLKKKAGELVTRCNSEVCLVCYDPYGQVDVWP 45 567******************************99997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
METSRKVYEG RKATLKKKAG ELVTRCNSEV CLVCYDPYGQ VDVWPEDPAK AHSVIRKYYS 60 SLQQEVEEED GGGGGGGGGP SPSPSSSSST PPPPSHHHHH HHHHHTKKRK REKLNLSDML 120 ERKRKKLQEQ VDNQFLEEDN VGNKNNDIMG FSFLPVWYDE LDNLSKNSLM GLSDYLNARI 180 RSLDERISRT QFQKQRYDQE VQPPQPSHVG RSYVMADGGV LQFSLNLPQQ STISWTK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 114 | KKRKREKL |
2 | 107 | 125 | KKRKREKLNLSDMLERKRK |
3 | 107 | 126 | KKRKREKLNLSDMLERKRKK |
4 | 108 | 127 | KKRKREKLNLSDMLERKRKK |
5 | 109 | 128 | KKRKREKLNLSDMLERKRKK |
6 | 122 | 126 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 4e-10 | M-type_MADS family protein |