PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON65309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21534.2 Da PI: 10.6539 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.2 | 3.3e-11 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n s r+ tf kRr+g+lKK + L + C ++ + ii+s+ PON65309.1 11 IYNPSARKGTFKKRRKGLLKKLSNLTTFCCIDTCAIIYSP 50 779999*********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MARKKLNLAY IYNPSARKGT FKKRRKGLLK KLSNLTTFCC IDTCAIIYSP YEAQPKLFPS 60 AAGVHHVLVR FRKTPEMEQR KKMLNQEGLL SQRIAKSIEQ LKRQRNDNRE WELRQVIFQS 120 LAGNTCLQGF SVKDFNDLRW LIDRNLYDIH KCKDRIIHNK MLVPLAAAAA PGAVADGKQT 180 RGGESTIC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKLNLAYIYNPSARKGTFKKRR |
2 | 17 | 32 | RKGTFKKRRKGLLKKL |
3 | 22 | 26 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-43 | M-type_MADS family protein |