PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON62293.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 308aa MW: 34545.6 Da PI: 4.8445 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.1 | 4.7e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s PON62293.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP | |||||||
2 | K-box | 27.6 | 1.2e-10 | 92 | 162 | 9 | 79 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ e+lqqe+ +L++++++ ++++R + + L+ s++ L + e++L + l+++ ++K+ ll++q++ PON62293.1 92 AVNSEIEELQQEIGRLQQQLQMAEEQIRMYEPDPLKITSMEKLDSCEKNLVDTLTRVMQRKELLLTNQLSS 162 567889**************************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 RSEIQNKEHL LRTLQQLRSE SDIAFQFSNP AAVNSEIEEL QQEIGRLQQQ LQMAEEQIRM 120 YEPDPLKITS MEKLDSCEKN LVDTLTRVMQ RKELLLTNQL SSYEPSGISH QQVFPASFEN 180 TIAQIFDASA PLDQLRDLAS SVYDPFSQGT SSNADPSSMQ GECHVPINAG GDHGDHLQDW 240 THQAYNPTST GHLPSLVPSN MYSQIQQELG TSDIPEMVSH QQMEIPNPIG SSNVLQADNT 300 TEAANFGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 6e-81 | MIKC_MADS family protein |