PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON61308.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

M-type_MADS

Protein Properties

Length: 439aa MW: 49637.4 Da PI: 6.4632

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON61308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.1	1.5e-15	47	78	8	39
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevavii 39 r+ tf kR+ g++KKA+ELS+LCd++v+++i PON61308.1 47 ARKRTFQKRKIGLIKKAYELSTLCDVKVCLVI 78 5888**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MEMDLLVGNG MAMLGMDLLA YFNSAQISYQ KMGRGKLPLK LMPKEQARKR TFQKRKIGLI 60 KKAYELSTLC DVKVCLVIND VNNNNNQSGD QVVEPSSSSS IITWPNEHHE VAAIIDAYEA 120 AMANNPPPKR LQTLSDFFAE RTKKVMAETQ KLHDQTNHNE IAELSENQVF ELHSHLNHRI 180 QHVEEQMMRR RSTTYYYNNN NNQFDIQDIP RMNMQPSLDY YSSSHHHEAM ATSQMYGHFP 240 YYTTTPQPWN IDQPSSSNNP FPVASQTMSL DLNHHPYKGS FNVLLYSNDY AGNSSTRTNT 300 YGDHARHNDS IQCYSSSNGA PLEGPAGDHF AMRYGDVFNG PPLLESGIMQ QSDQSGMMLI 360 SNNNPMTLAL QQPSTYHVNQ PLLPLLAGTS DPEWLYCPTI EPVSRQTRPA EAMASSSSHG 420 GQMYTSSQGD VKYYYPQQQ

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MEMDLLVGNG MAMLGMDLLA YFNSAQISYQ KMGRGKLPLK LMPKEQARKR TFQKRKIGLI  60
KKAYELSTLC DVKVCLVIND VNNNNNQSGD QVVEPSSSSS IITWPNEHHE VAAIIDAYEA  120
AMANNPPPKR LQTLSDFFAE RTKKVMAETQ KLHDQTNHNE IAELSENQVF ELHSHLNHRI  180
QHVEEQMMRR RSTTYYYNNN NNQFDIQDIP RMNMQPSLDY YSSSHHHEAM ATSQMYGHFP  240
YYTTTPQPWN IDQPSSSNNP FPVASQTMSL DLNHHPYKGS FNVLLYSNDY AGNSSTRTNT  300
YGDHARHNDS IQCYSSSNGA PLEGPAGDHF AMRYGDVFNG PPLLESGIMQ QSDQSGMMLI  360
SNNNPMTLAL QQPSTYHVNQ PLLPLLAGTS DPEWLYCPTI EPVSRQTRPA EAMASSSSHG  420
GQMYTSSQGD VKYYYPQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.2	8e-12	MIKC_MADS family protein