PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON61296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28610.2 Da PI: 8.7294 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.2e-05 | 95 | 117 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H PON61296.1 95 SCSVCSRVYPTSRLLSIHISEaH 117 6******************9888 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence |
MAMDVEEGQL GFPYWQPVCR RFDPDSPFFA SGNIERELLA KQVAIDLTED EKNYLRSWVA 60 EDSTRGVFCP IAGCGARLTS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHISEAHDSF 120 FQAKVARGYA MYECLVEGCT LKFKCYKSRH QHLVDKHKFP TSFEFFGKAR PSKKLRQKQQ 180 RKQANHKKAE ASSMEVESET IDGLVSAVSK LSTSDSSPSS ISFGRRNTRG LTFVPRAIQR 240 DKRPDSSSAE TKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-112 | C2H2 family protein |