PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON58097.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 352aa MW: 39451.7 Da PI: 6.9919

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON58097.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	190	209	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ PON58097.1 190 FSCPVCYKTFNRYNNMQMHM 209 89*****************9 PP
2	zf-C2H2	14.5	0.0001	274	296	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PON58097.1 274 FMCRKCGKAFAVRGDWRTHEKNC 296 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MADYPYSNFF KPNGLFQFNP FHHAPSPSNP NPFPHHRHQT HHNLYFLGNQ TGLSNNPVVV 60 PPQTPSSPPV REALPLLSLS PSNYHNNEEN DDEDDQNDDD IDINIKTSGC GSSSSNSTTV 120 TVALHIGLPS PSAAEMEAVL SGSSSEVTAE KGDHDHHDHD SAGLYPTNTL NKGQYWIPTP 180 SQILIGPTQF SCPVCYKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCS 240 PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW 300 YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGFDQEDDEP ASEVEQDNDS MQ

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MADYPYSNFF KPNGLFQFNP FHHAPSPSNP NPFPHHRHQT HHNLYFLGNQ TGLSNNPVVV  60
PPQTPSSPPV REALPLLSLS PSNYHNNEEN DDEDDQNDDD IDINIKTSGC GSSSSNSTTV  120
TVALHIGLPS PSAAEMEAVL SGSSSEVTAE KGDHDHHDHD SAGLYPTNTL NKGQYWIPTP  180
SQILIGPTQF SCPVCYKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCS  240
PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW  300
YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGFDQEDDEP ASEVEQDNDS MQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-134	C2H2 family protein