PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON58026.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

CO-like

Protein Properties

Length: 391aa MW: 42633.5 Da PI: 5.2801

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON58026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.5e-06	21	62	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ ++ +lC+ C +H H++ PON58026.1 21 RVCDTCRAAACTVYCRADSAYLCAGCDARIHAAnrvasrHER 62 79****99*******************55567777765 PP
2	zf-B_box	28.9	2.4e-09	63	107	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp PON58026.1 63 VWVCEACERAPAAFICKADAASLCATCDADIHSAnplarrHHRVP 107 689*****************************6688999977776 PP
3	CCT	69.4	9.6e-24	322	365	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PON58026.1 322 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 365 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MMKAETPGAV SGAGGAKVWA RVCDTCRAAA CTVYCRADSA YLCAGCDARI HAANRVASRH 60 ERVWVCEACE RAPAAFICKA DAASLCATCD ADIHSANPLA RRHHRVPVLP ISGCVYGPPA 120 TDRVGSAMLG EAEDGFLSPD GDEAIDQDQD EDEDEAASWL LLNPVKGGQN QGNGFLFGGE 180 VDEYLDLVEY NSGTENQFAD PYNQSNSNQQ QQVQQSYVVS QQKSHGGDSV VPVQCVDGNS 240 QLQQQQNQSF QLGLEFESSK TAYSYNGSIS HSVSVSSMDV SVVPDSTMSD ISISHPRPSK 300 GTIDLFSGPP IQMPTQLTPM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR 360 FAKRTNVEVE VDQMFSTALM ADTVYGIVPS F

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MMKAETPGAV SGAGGAKVWA RVCDTCRAAA CTVYCRADSA YLCAGCDARI HAANRVASRH  60
ERVWVCEACE RAPAAFICKA DAASLCATCD ADIHSANPLA RRHHRVPVLP ISGCVYGPPA  120
TDRVGSAMLG EAEDGFLSPD GDEAIDQDQD EDEDEAASWL LLNPVKGGQN QGNGFLFGGE  180
VDEYLDLVEY NSGTENQFAD PYNQSNSNQQ QQVQQSYVVS QQKSHGGDSV VPVQCVDGNS  240
QLQQQQNQSF QLGLEFESSK TAYSYNGSIS HSVSVSSMDV SVVPDSTMSD ISISHPRPSK  300
GTIDLFSGPP IQMPTQLTPM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR  360
FAKRTNVEVE VDQMFSTALM ADTVYGIVPS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-102	CO-like family protein