PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON57482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24907.6 Da PI: 9.4778 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.7 | 4.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PON57482.1 9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 72.9 | 9.7e-25 | 92 | 180 | 11 | 98 |
K-box 11 eakaeslqqe.lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++ +++e + k+ie L+ ++R+l G++L+s+sl eLqq+e+qLe+sl kiR++Kn+l++eqi++l++ e++l e+n +Lr++ PON57482.1 92 HEHQSAMSKEgNFSMAKKIEHLEVSKRKLFGDGLDSCSLHELQQIENQLERSLGKIRARKNQLYKEQIDHLKEEERSLLEQNAKLREQC 180 3334444444155899**********************************************************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence |
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 RCISINKTIE RYTQRKANDG GLRSAKAVSE DHEHQSAMSK EGNFSMAKKI EHLEVSKRKL 120 FGDGLDSCSL HELQQIENQL ERSLGKIRAR KNQLYKEQID HLKEEERSLL EQNAKLREQC 180 GMVPLLPSTE PPEVVHNIDQ NMEVETELFI GLPERRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G22950.1 | 3e-78 | MIKC_MADS family protein |