PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON57172.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

CO-like

Protein Properties

Length: 374aa MW: 42855.9 Da PI: 6.293

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON57172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.8	1.9e-07	5	46	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 + r+C+ +++k + l+C+ ++ lC +C e H g H PON57172.1 5 RRRVCDYCNDKTALLYCRADSAKLCFSCDREVH-GtnqlftkH 46 5789*****************************.435566555 PP
2	zf-B_box	25.7	2.3e-08	51	92	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ ++++fC + ++ +C++C + H + H+++p PON57172.1 51 LCDACDDSPATIFCSTESSVFCQNCDWKRH-NlslslvHDRRP 92 7*****************************.658888888777 PP
3	CCT	65	2.2e-22	330	372	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re a++RYkeKrktR+++K+irYesRK++Ae+R R+KGrF+k PON57172.1 330 REGAISRYKEKRKTRRYDKRIRYESRKVRAECRTRIKGRFAKI 372 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MNPQRRRVCD YCNDKTALLY CRADSAKLCF SCDREVHGTN QLFTKHSRFL LCDACDDSPA 60 TIFCSTESSV FCQNCDWKRH NLSLSLVHDR RPLEGFNGCP SVSEILGILG FEDFDKKALT 120 LNEERDEFFA PQLDGSLGLV DGFWETPSVV SLDDLILSNS SRNFQALGIP PLPKNRNAVC 180 GQHKEEVLVQ LRELAKVEPN SNDENVDAAD SLMGFQPVVP EQSLQPGRMW MGSQYDAEAE 240 PNTVPTFETH ACQWYVDNDE AAYQDVLPDM LLRRHLRKGY KDSDKRSEIS DTRSHANDDG 300 HNERSPHPMD SRASSDYQKV APYELSSQER EGAISRYKEK RKTRRYDKRI RYESRKVRAE 360 CRTRIKGRFA KIDH

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MNPQRRRVCD YCNDKTALLY CRADSAKLCF SCDREVHGTN QLFTKHSRFL LCDACDDSPA  60
TIFCSTESSV FCQNCDWKRH NLSLSLVHDR RPLEGFNGCP SVSEILGILG FEDFDKKALT  120
LNEERDEFFA PQLDGSLGLV DGFWETPSVV SLDDLILSNS SRNFQALGIP PLPKNRNAVC  180
GQHKEEVLVQ LRELAKVEPN SNDENVDAAD SLMGFQPVVP EQSLQPGRMW MGSQYDAEAE  240
PNTVPTFETH ACQWYVDNDE AAYQDVLPDM LLRRHLRKGY KDSDKRSEIS DTRSHANDDG  300
HNERSPHPMD SRASSDYQKV APYELSSQER EGAISRYKEK RKTRRYDKRI RYESRKVRAE  360
CRTRIKGRFA KIDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	9e-92	CO-like family protein