PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON56373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | C2H2 | ||||||||
Protein Properties | Length: 518aa MW: 56430.2 Da PI: 8.8718 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PON56373.1 86 FICEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00074 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + PON56373.1 163 WKCDKCSKRYAVQSDWKAHSKIC 185 58*****************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence |
MMKGLMVDDN MSNLTFASGE ISASSSTRND QSAGNLYPQN SSASTNQLPP PPPPPNKKKR 60 SLPGNPDPDA EVIALSPKTL LATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK 120 EVIRKKVYVC PEPSCVHHDP SRALGDLTGI KKHFFRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESSS TSTTTARAMT AIMNPLQHQH 240 QHRHHHLSSS SSQQLVLPQN IEHHLHGGGA AIKREVVQDL IPPWLAYPPP QPPPPPSLQP 300 PQPLMQFSSP NNPNSTLLNI QTQQPPPPPP QAAASPFASA TALLQKAAQM GSTMSNRAAS 360 FLKAHQAHHY LASESNNNNN LASESNNNNN MGTASGVVSS LGLSCESIAH DHDHDQFGIG 420 NDYEEMMSSL SAVVAPPMPP PPATGINAAT PSGSSSRVGM GGDGGHGGGN EGLTRDFLGL 480 RTFPHKDIFN IVGLDHINSS AYGSDHPKHD HHQPSWQG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 126 | KLKQRSNKEVIRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-114 | C2H2 family protein |