PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON55368.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 349aa MW: 37274.5 Da PI: 7.7299

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON55368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00083	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PON55368.1 146 YECKTCNRTFPSFQALGGHRASH 168 99**********99999998887 PP
2	zf-C2H2	13	0.00031	234	256	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PON55368.1 234 HECSICGSEFTSGQALGGHMRRH 256 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEIFHEEFVG SSNFDNQHMI LKGKRSKRQR TPSPLAPAGA TSTSSSSACG GGGGGGGGGG 60 GGEEYGNSFS SPTTSGGEVY DSTEEEEDMA NCLILLAQGN HHHRRQVAKK IRGHQKKSLN 120 DAITTTTTVS STTSPLVSKP GGFDVYECKT CNRTFPSFQA LGGHRASHKK PKLLDEKKPV 180 IIAVSTASAA AAAAAASEEL YEEEQEEMFV FNKNTAAIKA TVPPASFNKG NKIHECSICG 240 SEFTSGQALG GHMRRHRAAA AAPPSNVITT TTTTTTAVAT AINTNKVETI MKDKQRNILA 300 LDLNLPAPED DHHHHHHHHR SNPEPKFQFV PTQQAHLVFS APALVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEIFHEEFVG SSNFDNQHMI LKGKRSKRQR TPSPLAPAGA TSTSSSSACG GGGGGGGGGG  60
GGEEYGNSFS SPTTSGGEVY DSTEEEEDMA NCLILLAQGN HHHRRQVAKK IRGHQKKSLN  120
DAITTTTTVS STTSPLVSKP GGFDVYECKT CNRTFPSFQA LGGHRASHKK PKLLDEKKPV  180
IIAVSTASAA AAAAAASEEL YEEEQEEMFV FNKNTAAIKA TVPPASFNKG NKIHECSICG  240
SEFTSGQALG GHMRRHRAAA AAPPSNVITT TTTTTTAVAT AINTNKVETI MKDKQRNILA  300
LDLNLPAPED DHHHHHHHHR SNPEPKFQFV PTQQAHLVFS APALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-52	C2H2 family protein