PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON55364.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 482aa MW: 53448.9 Da PI: 8.7931

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON55364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.3e-07	280	302	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H PON55364.1 280 HYCQVCGKGFKRDANLRMHMRAH 302 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MNTNIHSAGD TTPCYTNLSS SSSSGNLSLQ MYPNIVSDQN HHHLNAPSSS VAAAEVNINH 60 STTGLSSILY SLSILKDKVH QLQSLAAILL SPAESAAAAD QTGSADSTSV AIASMNNMYN 120 AIQEIMMTAS SMMFSFQQMG VLSTSGNSSN STEDHQWQRL IKVNNNDNTN HTTQQPNFYS 180 SETAWFGTTH DQNYNNNNDA TTISTCVKDS NTANTSNQMI MTHQSQRKDH RRPEENAFPI 240 ALGRETKGGG GGQGLNSTKS NNNFDIIELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR 300 AHGDEYKTSA ALSNPMKKNN FIKNNVRSGG WIGDEEDEFS KKLLPKKYSC PQEGCRWNKN 360 HVKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNRKQFSVLS DLKTHEKHCG DLKWQCSCGT 420 TFSRKDKLLG HVALFVGHTP LTMISTSTNI SANNKPAKVV LDHSQVSHRQ IQLDHGIVKM 480 ME

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MNTNIHSAGD TTPCYTNLSS SSSSGNLSLQ MYPNIVSDQN HHHLNAPSSS VAAAEVNINH  60
STTGLSSILY SLSILKDKVH QLQSLAAILL SPAESAAAAD QTGSADSTSV AIASMNNMYN  120
AIQEIMMTAS SMMFSFQQMG VLSTSGNSSN STEDHQWQRL IKVNNNDNTN HTTQQPNFYS  180
SETAWFGTTH DQNYNNNNDA TTISTCVKDS NTANTSNQMI MTHQSQRKDH RRPEENAFPI  240
ALGRETKGGG GGQGLNSTKS NNNFDIIELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR  300
AHGDEYKTSA ALSNPMKKNN FIKNNVRSGG WIGDEEDEFS KKLLPKKYSC PQEGCRWNKN  360
HVKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNRKQFSVLS DLKTHEKHCG DLKWQCSCGT  420
TFSRKDKLLG HVALFVGHTP LTMISTSTNI SANNKPAKVV LDHSQVSHRQ IQLDHGIVKM  480
ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	7e-94	C2H2 family protein