PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON55162.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 308aa    MW: 33828.4 Da    PI: 10.4789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON55162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-213782449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 n+sn qvtfskRr g++KKA+EL++LC+ae a+i+fs+  k++ +
  PON55162.1 37 TNESNLQVTFSKRRSGLFKKASELCTLCGAEMAIIVFSPGRKVFSF 82
                699************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
METPKPKPKP NPNPNPNSDS NKKASRGRQK VEMVKMTNES NLQVTFSKRR SGLFKKASEL  60
CTLCGAEMAI IVFSPGRKVF SFGHPNVESV IDRFMNRNQP VPTSMNTGTM QLIEAHRSAN  120
VRELNQQLMQ VLGQLDLEKK RADELKKARK ASQAQCWWEA PLETLDLKQL EQLKTAMEEL  180
KKTVTQQADR LLIQTTSSNT LLPPNFNSNN TNNNNAGPFF VGGGSSSSIG GGVMVPFEQV  240
AKSIINNNIN YTNARFEATT TVNPAMPLQL PAQLQVQASA PAPAPARSPA SQVYNNNNNV  300
GYGGRGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-72M-type_MADS family protein