PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54645.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 29057.8 Da PI: 10.0872

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.6e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ PON54645.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73 79***********************************************8 PP
2	K-box	103.4	2.9e-34	91	188	3	100
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +s++ s++ea+a+ +qqe+akL+ +ie+Lq+ +R llG+ ++s + +eL+ Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e PON54645.1 91 SSNTGSVSEANAQFYQQEAAKLRTQIESLQKGIRELLGDTVSSANTRELKGLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 188 3344449****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MAYQNKSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANQSVKST IERYKKTSSD SSNTGSVSEA NAQFYQQEAA KLRTQIESLQ 120 KGIRELLGDT VSSANTRELK GLETKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ 180 LLRAKIAENE RNQNMSLNMA GGGNYELMQQ QQSHEQQQQP AAAFDSRNYF QVNALQPNHH 240 QYQRQDPMAL QLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-113	MIKC_MADS family protein