PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54564.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

RAV

Protein Properties

Length: 349aa MW: 39295.3 Da PI: 6.0308

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.8	1.5e-09	46	91	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ykG + ++g W A+I+ + +r++lg+f +eeAa a++ a+ +l+ PON54564.1 46 YKGTV-RQQNGHWGAQIYA------NhQRIWLGTFKLEEEAAMAYDSAAIRLR 91 56643.445899**999......44**********************98 PP
2	B3	90.9	9.6e-29	169	267	1	87
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ +++++++d+ rsW+++++y+++s+++v+t+GW++Fvk++gLk++D++ F+l PON54564.1 169 FQKELTPSDVGKLNRLVIPKKYAIKYlpriseekseegseGGV--DDVEVVFRDRLMRSWKFRYCYWRSSQSFVFTRGWSRFVKEKGLKANDTIAFYLC 265 99************************999876665544333..889***********************************************87 PP SS CS B3 86 gr 87 ++ PON54564.1 266 EQ 267 54 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEEEMSSIVI NGAANGIQEA ADSNGSVHLL PPPSKRARTG SSSAKYKGTV RQQNGHWGAQ 60 IYANHQRIWL GTFKLEEEAA MAYDSAAIRL RSGDSHRNFP WTKATAEEPM FQDTHSTETL 120 LNMIKDGSYQ AKFEDFLKNT CTENLANEAG LGLGTRVNKD GVLFKQLLFQ KELTPSDVGK 180 LNRLVIPKKY AIKYLPRISE EKSEEGSEGG VDDVEVVFRD RLMRSWKFRY CYWRSSQSFV 240 FTRGWSRFVK EKGLKANDTI AFYLCEQREA QDEKEARVFA VIDVVEDKGG LLVEGAKQSC 300 LGLHVNKEYQ KEVEADREEG EIMEEAAAQP IPSKAENSGF RLFGVQIVV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEEEMSSIVI NGAANGIQEA ADSNGSVHLL PPPSKRARTG SSSAKYKGTV RQQNGHWGAQ  60
IYANHQRIWL GTFKLEEEAA MAYDSAAIRL RSGDSHRNFP WTKATAEEPM FQDTHSTETL  120
LNMIKDGSYQ AKFEDFLKNT CTENLANEAG LGLGTRVNKD GVLFKQLLFQ KELTPSDVGK  180
LNRLVIPKKY AIKYLPRISE EKSEEGSEGG VDDVEVVFRD RLMRSWKFRY CYWRSSQSFV  240
FTRGWSRFVK EKGLKANDTI AFYLCEQREA QDEKEARVFA VIDVVEDKGG LLVEGAKQSC  300
LGLHVNKEYQ KEVEADREEG EIMEEAAAQP IPSKAENSGF RLFGVQIVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	6e-96	RAV family protein