PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON54232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 347aa MW: 39708.3 Da PI: 4.6284 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.6 | 2.9e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie+++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ +s PON54232.1 9 KRIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSFFS 58 79******************************************998775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MGRVKLQIKR IESTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSFFSGN 60 KSIEEILARY VNLPEQEQGR LHNNEFLKRA VCKLRSEADP NYQTNSPTST DSQLEEIQQE 120 ILCFRSQLEE MENRLRIFEG DPSEITTLHE ADYREQILKE TLKNICMRKQ DLEKYTSFES 180 QLTTQVDLPR ETAKLDHREL VAASPQNIID WLSQRDPQIQ ILNFLDANGL LPVRDEAQRG 240 VEILAPPSRS VVLVNGQNIN DDDEVDDHVT PTSGLENDNN DDNINGQPPQ LGHLLDVNLS 300 PSWTQFYSTG DETFDEAGLP GGRERHELYM SRYAMPHILT PNHNQQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-53 | MIKC_MADS family protein |