PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54232.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 347aa    MW: 39708.3 Da    PI: 4.6284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krie+++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  PON54232.1  9 KRIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSFFS 58
                79******************************************998775 PP

Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MGRVKLQIKR IESTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSFFSGN  60
KSIEEILARY VNLPEQEQGR LHNNEFLKRA VCKLRSEADP NYQTNSPTST DSQLEEIQQE  120
ILCFRSQLEE MENRLRIFEG DPSEITTLHE ADYREQILKE TLKNICMRKQ DLEKYTSFES  180
QLTTQVDLPR ETAKLDHREL VAASPQNIID WLSQRDPQIQ ILNFLDANGL LPVRDEAQRG  240
VEILAPPSRS VVLVNGQNIN DDDEVDDHVT PTSGLENDNN DDNINGQPPQ LGHLLDVNLS  300
PSWTQFYSTG DETFDEAGLP GGRERHELYM SRYAMPHILT PNHNQQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-53MIKC_MADS family protein