PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON54133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 325aa MW: 36741.4 Da PI: 6.793 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.1e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk PON54133.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence |
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCSGK 60 RSIEEVIAKF AQLTPQERAK RKLESLEELS NQAMLFQTQL SEINKRLSYW TNPDKIDSVE 120 HLGQMENSLR ESLNQIRSHK EILQKQQFMS LDCSTQFQNG IHIPFRVGAE QQLQPLSWIP 180 NNDSQNIVLP DDPSLLSHRE LECSTSSSFG SYSGYFGMGR NPEISNSGQE NGMVSALSRT 240 TPMSLQLGGG QFPYVPYNLN VLNDPKFQPQ TEINPQENAV DYHVNGNFEV PRHGYETNHQ 300 DNWASTSGPY AVSILDETLY PQHPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 5e-73 | M-type_MADS family protein |