PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON53968.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 562aa MW: 61335.2 Da PI: 9.3251

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON53968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PON53968.1 60 FICEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	12.9	0.00034	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + PON53968.1 137 WKCEKCSKKYAVQSDWKAHTKIC 159 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MVLAPPSEGL LKNQIQTLTL TLIQIHQLIR RREIYLETQA NPDAEVIALS PKSLMATNRF 60 ICEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKDVIRKK VYVCPEKSCV HHDPSRALGD 120 LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKICG TREYKCDCGT LFSRKDSFIT 180 HRAFCDALAE ENARFGTTAV PNTNILPSFI NNNINNPQTA ASRMTHPHLS PIFQPEFGSE 240 SVANFGSNAT GDIRPRLPLW LDPSNSHQLN SNNIPFLSVT GGNSPSVSGG FPELLQTAAA 300 TATLFGGQPS PTPPQTSHHQ WLNKFSSAHD HQGATTFPTI SSSLLPRTGL KEEETKGNNN 360 SNSISLSESM MATTSSLHPN NQSLQSQGPA PHMSATALLQ KAAQMGSTRS NNASSFSGSA 420 FGLISSLSSS SSNSRKQVLF RQPVNHQSTA AENNFNDLVN SLQAASSDNA NNNNNNNNNG 480 PAAVLSSPSS FNLKQAAAAQ SLSANNNENH DIDEHSLTRD FLGVGGDGHH IHGSGSNFFQ 540 QELEKFASMG SAMNLSQFSG HH

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MVLAPPSEGL LKNQIQTLTL TLIQIHQLIR RREIYLETQA NPDAEVIALS PKSLMATNRF  60
ICEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKDVIRKK VYVCPEKSCV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKICG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ENARFGTTAV PNTNILPSFI NNNINNPQTA ASRMTHPHLS PIFQPEFGSE  240
SVANFGSNAT GDIRPRLPLW LDPSNSHQLN SNNIPFLSVT GGNSPSVSGG FPELLQTAAA  300
TATLFGGQPS PTPPQTSHHQ WLNKFSSAHD HQGATTFPTI SSSLLPRTGL KEEETKGNNN  360
SNSISLSESM MATTSSLHPN NQSLQSQGPA PHMSATALLQ KAAQMGSTRS NNASSFSGSA  420
FGLISSLSSS SSNSRKQVLF RQPVNHQSTA AENNFNDLVN SLQAASSDNA NNNNNNNNNG  480
PAAVLSSPSS FNLKQAAAAQ SLSANNNENH DIDEHSLTRD FLGVGGDGHH IHGSGSNFFQ  540
QELEKFASMG SAMNLSQFSG HH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	100	KLRQRSNKDVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	4e-93	C2H2 family protein