PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON53897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29008.8 Da PI: 6.9212 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 9.3e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien rqvtf+kRrng++KKA+ELSvLCdaev viifsstg+ly++ss PON53897.1 10 KIENLNSRQVTFCKRRNGLFKKAQELSVLCDAEVGVIIFSSTGRLYDFSS 59 69**********************************************96 PP | |||||||
2 | K-box | 58.1 | 3.8e-20 | 99 | 179 | 20 | 100 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + + +e+++L+ + +++G++L+ Ls+k+Lq++e++L ++l +i++kK++llleq++++ +e+++ en++Lrk++ee PON53897.1 99 DEKDVMDETQMLRLTCMRMMGKELDGLSFKDLQHMEDKLTEGLLSIKDKKEQLLLEQVKKSTLREQKAMMENENLRKEIEE 179 44568899*****999**************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MGRGKIEIRK IENLNSRQVT FCKRRNGLFK KAQELSVLCD AEVGVIIFSS TGRLYDFSST 60 RMDDILSRYN RGPGCLSNNL EPSPDLDATN SEKSPPEHDE KDVMDETQML RLTCMRMMGK 120 ELDGLSFKDL QHMEDKLTEG LLSIKDKKEQ LLLEQVKKST LREQKAMMEN ENLRKEIEEV 180 RRNYITPILS SHPLERRVTT KSTKANTDQP NSVSEESEHS DASLQLRLSS CFGPKRKAAR 240 IESASYDSAS QVASE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 2e-55 | MIKC_MADS family protein |