PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52562.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

ARF

Protein Properties

Length: 691aa MW: 76614.4 Da PI: 6.4318

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.2	3.1e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++el PON52562.1 127 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGEL 221 99**************************9543..445569********************************************..3489999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r PON52562.1 222 RVGVRR 227 **98 PP
2	Auxin_resp	102.9	3.9e-34	253	332	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err++Gt+vgv d+++ +W++S+WrsLk PON52562.1 253 ASHAVTTRTLFVVYYKPRT--SQFIIGLNKYLEATNNKFSVGMRFKMRFEGEDAPERRFMGTIVGVGDVSS-EWTDSNWRSLK 332 689*************6..9******************************************888.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MAHLEGGSSI SCTETGWRSS GLSKELWKAC AGPLVEVPRP GERVYYFPQG HMEQLEASTN 60 QELNHQIPLF NLPSKILCQV VHIEHLAEQE TDEVYAQITL VPEADQSEPT SPDPCPSEPP 120 RPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ ATPTQELAAK DLHGYEWKFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSLMPSSVI 240 SSHSMHLGVL ATASHAVTTR TLFVVYYKPR TSQFIIGLNK YLEATNNKFS VGMRFKMRFE 300 GEDAPERRFM GTIVGVGDVS SEWTDSNWRS LKVQWDEHAT IQRPEKVSPW EIEPFVASSS 360 LNLTQPVAKS KRPRPVDIPQ SEITTNSAAS AFWFQGSTQS VELTQLGSTT EVQGSDSQIA 420 WPLKQKDMSN GNYYGSMVRS EGVWSSPHVD ISLNLFPDST GDNKAVSARS VLSSYTSPVS 480 SRPNNSVEKG TKSEASVCCR LFGINLTSHS TTPSHPEREP ACSVVASCSD KGSTPAAAPE 540 ADKAQQELSK LSTDQKIISE VLQKDTQSKQ GSTLPSRSRT KVQMQGVAVG RAVDLTMLSG 600 YNDLIDELER MFEIKGELHP PSKWAVVFTD DENDMMLVGD DLWIEFCKMV KKMFIYSIDE 660 VKKMSNFKLR ASSLECEGTD VSLDSEHRAE I

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MAHLEGGSSI SCTETGWRSS GLSKELWKAC AGPLVEVPRP GERVYYFPQG HMEQLEASTN  60
QELNHQIPLF NLPSKILCQV VHIEHLAEQE TDEVYAQITL VPEADQSEPT SPDPCPSEPP  120
RPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ ATPTQELAAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSLMPSSVI  240
SSHSMHLGVL ATASHAVTTR TLFVVYYKPR TSQFIIGLNK YLEATNNKFS VGMRFKMRFE  300
GEDAPERRFM GTIVGVGDVS SEWTDSNWRS LKVQWDEHAT IQRPEKVSPW EIEPFVASSS  360
LNLTQPVAKS KRPRPVDIPQ SEITTNSAAS AFWFQGSTQS VELTQLGSTT EVQGSDSQIA  420
WPLKQKDMSN GNYYGSMVRS EGVWSSPHVD ISLNLFPDST GDNKAVSARS VLSSYTSPVS  480
SRPNNSVEKG TKSEASVCCR LFGINLTSHS TTPSHPEREP ACSVVASCSD KGSTPAAAPE  540
ADKAQQELSK LSTDQKIISE VLQKDTQSKQ GSTLPSRSRT KVQMQGVAVG RAVDLTMLSG  600
YNDLIDELER MFEIKGELHP PSKWAVVFTD DENDMMLVGD DLWIEFCKMV KKMFIYSIDE  660
VKKMSNFKLR ASSLECEGTD VSLDSEHRAE I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	371	375	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein