PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON50689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25491.9 Da PI: 8.2456 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 15 | 64 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+++s+rqvtfskR+ g++ KA EL +L++aev i+fs+++k+y + PON50689.1 15 KRINEESKRQVTFSKRKLGLFNKAAELNILTGAEVVAIVFSQHQKIYSFV 64 79*********************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MVKVITKGRQ KVEIKRINEE SKRQVTFSKR KLGLFNKAAE LNILTGAEVV AIVFSQHQKI 60 YSFVSPGSDY LIKSYRNWGT APSNDIINYA PQEHIDHHGL GHGYHNLEAE VNFLEEKNKL 120 VLKNRIDMEA NGEREGFWWN HPHENMDFEE AKRFRDALLG FNEMVEKKVK EMTMMTKQPA 180 KNYFPSSNEG ESEACFGQPW ARGGNNPTFV HGDMSGVKCF LP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 5e-19 | M-type_MADS family protein |