PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON50173.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

ARF

Protein Properties

Length: 674aa MW: 74569 Da PI: 6.7608

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON50173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.4	6.6e-24	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ l PON50173.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfppldltAQPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGDL 220 89**************************996555555..8999*****************************************3..477888 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ PON50173.1 221 CVGIRRA 227 **996 PP
2	Auxin_resp	110.3	2e-36	277	360	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+t+++FevvY+Prast+eF+v++ v++a++++++ G Rfkm fetedss++++ +Gt+++v+ ++p++Wp+S+Wr+L+ PON50173.1 277 AATLAATGQPFEVVYYPRASTPEFCVRAPAVRAAMQIRWCSGLRFKMPFETEDSSRISWfMGTISSVQVASPIHWPDSPWRLLQ 360 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MITVMDSGRE PTKKGFEKCL DPQLWHACAG PLVQMPPVNS KVLYFPQGHA EHAQGSVDFG 60 NFRIPSLILC KVSAIRFMAD PDTDEVFAKM GLTPLRDNKD LDVEDEGEYL GNNGIVVENP 120 EKPKSFAKTL TQSDANNGGG FSVPRYCAET IFPPLDLTAQ PPVQTILAKD VHGETWKFRH 180 IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKKG IGCGHEYPSG 240 WNPSVGNYGS QYENRVLGKN GSRDLKGKVR AESVVEAATL AATGQPFEVV YYPRASTPEF 300 CVRAPAVRAA MQIRWCSGLR FKMPFETEDS SRISWFMGTI SSVQVASPIH WPDSPWRLLQ 360 VAWDEPDLLQ NVKRVNPWLV ELVSSIPAMH VSPFSTPRKK PRLPQNPDFA LVGQIPMPLL 420 STNFLSSSSP FRSIQDNVPT GIQGARHAQF GPYPSDHLNE LQAGLLPLGF QQFDHTNSLR 480 NPVGDYMKRT ENRENISCWL KMGHPNQDLK ANEDMKTPHL LLFGQVILTE EQLSKSSSGE 540 NSSSEGNLDK TTNHSDGSGS TENSSDGGSP WYKDHHNRRS DLLGLETGHC KVFIESDDVG 600 RTLDLSLLGS YQELYGKLAD MFGIEEGSGI LGNVLYRDAA GCVKHTGDEP FSEFLKTARR 660 LTIHTDSGSD NVGR

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MITVMDSGRE PTKKGFEKCL DPQLWHACAG PLVQMPPVNS KVLYFPQGHA EHAQGSVDFG  60
NFRIPSLILC KVSAIRFMAD PDTDEVFAKM GLTPLRDNKD LDVEDEGEYL GNNGIVVENP  120
EKPKSFAKTL TQSDANNGGG FSVPRYCAET IFPPLDLTAQ PPVQTILAKD VHGETWKFRH  180
IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKKG IGCGHEYPSG  240
WNPSVGNYGS QYENRVLGKN GSRDLKGKVR AESVVEAATL AATGQPFEVV YYPRASTPEF  300
CVRAPAVRAA MQIRWCSGLR FKMPFETEDS SRISWFMGTI SSVQVASPIH WPDSPWRLLQ  360
VAWDEPDLLQ NVKRVNPWLV ELVSSIPAMH VSPFSTPRKK PRLPQNPDFA LVGQIPMPLL  420
STNFLSSSSP FRSIQDNVPT GIQGARHAQF GPYPSDHLNE LQAGLLPLGF QQFDHTNSLR  480
NPVGDYMKRT ENRENISCWL KMGHPNQDLK ANEDMKTPHL LLFGQVILTE EQLSKSSSGE  540
NSSSEGNLDK TTNHSDGSGS TENSSDGGSP WYKDHHNRRS DLLGLETGHC KVFIESDDVG  600
RTLDLSLLGS YQELYGKLAD MFGIEEGSGI LGNVLYRDAA GCVKHTGDEP FSEFLKTARR  660
LTIHTDSGSD NVGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein