PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON49100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30919 Da    PI: 7.0453
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON49100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienk+ rqvtf+kRr+g+lKK +ELSvLCda++ +iifss+gklyey+s
  PON49100.1 10 RIENKTTRQVTFAKRRAGLLKKTHELSVLCDAQIGLIIFSSNGKLYEYCS 59
                9***********************************************96 PP

2K-box65.61.8e-2272170299
       K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 q ++g++ ++++++e+l+ e++++k+e++nLq ++ ++ GedL+sLsl eL++L++ Le+s +k+R++K +ll +++e+l++ke +l+++n+ L + ++
  PON49100.1  72 QLATGTQiVQQSEMEQLCGEVRRIKSETHNLQLSLQRYTGEDLSSLSLGELNELQDMLEHSTQKVRNRKFDLLQQKTENLKRKETMLEKDNEHLFHLIK 170
                 55677778999*********************************************************************************9987666 PP

Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MGRGKITIAR IENKTTRQVT FAKRRAGLLK KTHELSVLCD AQIGLIIFSS NGKLYEYCSD  60
TSSMENMIKR YQLATGTQIV QQSEMEQLCG EVRRIKSETH NLQLSLQRYT GEDLSSLSLG  120
ELNELQDMLE HSTQKVRNRK FDLLQQKTEN LKRKETMLEK DNEHLFHLIK EHQAAAASFE  180
HHHHHHQAEQ VTNMNVSKME EDGRIDISHH MNMNMNMNVN VNVLDQFPFA GEEQPNSVLQ  240
LATLQPPSFY PYRLLPTQPN RQDYSLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-47MIKC_MADS family protein