PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48815.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

RAV

Protein Properties

Length: 386aa MW: 45131 Da PI: 6.8831

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.7	9.1e-11	73	120	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV + +g W A+I+ + +r++lg+f +++eAa a++ a+ +l++ PON48815.1 73 RFKGVVQQQ-NGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIRLRN 120 68*9888.8**999......44******99***********97 PP
2	B3	91.7	5.5e-29	210	313	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..............---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ltpsdv+k++rlv+pkk+a ++ + e e+++l+++d+ rsW+++++y+++s+++v+t+GW++Fvk+n+Lk++D++ PON48815.1 210 FQKELTPSDVGKLNRLVIPKKYAVKYfpyvdelennnnnnK---EtengvEDIELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVI 305 99***************************9998886540...245566899****************************************** PP EEEE-SSSEE CS B3 81 vFkldgrsef 90 +F+ + ++ PON48815.1 306 TFYTCH--KG 313 *433..33 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MEDDSSSMVS SAKTNIVIAA TAETSCSINT NYAVHNARSY HHKRPRDHDH DHDRVDTNCD 60 NTNVMNIASS SARFKGVVQQ QNGHWGAQIY ANHQRIWLGT FKSEKEAAMA YDSAAIRLRN 120 GDTHRNFPWT NFTHYEPEFQ NHYTAEAILN MIKDGSYQFK FEEFLRARSE KREICEINST 180 TNHYRHHDNH HLNQQIRVDG DAQFLCRQLF QKELTPSDVG KLNRLVIPKK YAVKYFPYVD 240 ELENNNNNNK ETENGVEDIE LVFYDKLMRS WKFRYCYWRS SQSFVFTRGW NRFVKENNLK 300 ANDVITFYTC HKGNVHGMRE ENGQIFCLID VTHNGVSESQ MVKVEYLDDH GDKFDQGSTH 360 ECKYKEAETS NTVEEKGFRL FGVDIK

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MEDDSSSMVS SAKTNIVIAA TAETSCSINT NYAVHNARSY HHKRPRDHDH DHDRVDTNCD  60
NTNVMNIASS SARFKGVVQQ QNGHWGAQIY ANHQRIWLGT FKSEKEAAMA YDSAAIRLRN  120
GDTHRNFPWT NFTHYEPEFQ NHYTAEAILN MIKDGSYQFK FEEFLRARSE KREICEINST  180
TNHYRHHDNH HLNQQIRVDG DAQFLCRQLF QKELTPSDVG KLNRLVIPKK YAVKYFPYVD  240
ELENNNNNNK ETENGVEDIE LVFYDKLMRS WKFRYCYWRS SQSFVFTRGW NRFVKENNLK  300
ANDVITFYTC HKGNVHGMRE ENGQIFCLID VTHNGVSESQ MVKVEYLDDH GDKFDQGSTH  360
ECKYKEAETS NTVEEKGFRL FGVDIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-109	RAV family protein