PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48813.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 430aa MW: 48369.4 Da PI: 6.398

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	317	339	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F ++ ++ H+ +H PON48813.1 317 YTCPKCKGVFVTSQLFAAHMGSH 339 9*******************887 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MALPFDPNSY SNQIPNPINA QFHQFNSNNL GLNDRTMNQQ NHAVHLGLTQ RLVNEVRTAT 60 SLVPQRVQLV QTVNIDFFPV QNQTPLPGST FGDHHEFCVT EVVRTQEVVR TQLLNSASTR 120 DRFLAPNHDR YGTWSSTSIQ GQDNLQNQVM NHPIYTSTST ETQSSHNPVH NFGHGATYHG 180 SISTHFENPI FEQQYSSYQY VPNPGFNQNP PTRNQTATLR LIENNEPTVD DVEPLNAIFP 240 CVGTKKPIPT QNQVVPSDND NHHELQSLPF NVEQIYNTCH HDGNTILEEG DDHNKDGDEI 300 EGDGRTHSLP YKKYGPYTCP KCKGVFVTSQ LFAAHMGSHY KYESAEQRRR RHLAKYGRKK 360 HLRLVNSTGG LTVVPDQTQP LKEAAPARTE SKIISTEVVD EKKESGLEIV PGGSQLEGLH 420 DIPIKEESLE

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MALPFDPNSY SNQIPNPINA QFHQFNSNNL GLNDRTMNQQ NHAVHLGLTQ RLVNEVRTAT  60
SLVPQRVQLV QTVNIDFFPV QNQTPLPGST FGDHHEFCVT EVVRTQEVVR TQLLNSASTR  120
DRFLAPNHDR YGTWSSTSIQ GQDNLQNQVM NHPIYTSTST ETQSSHNPVH NFGHGATYHG  180
SISTHFENPI FEQQYSSYQY VPNPGFNQNP PTRNQTATLR LIENNEPTVD DVEPLNAIFP  240
CVGTKKPIPT QNQVVPSDND NHHELQSLPF NVEQIYNTCH HDGNTILEEG DDHNKDGDEI  300
EGDGRTHSLP YKKYGPYTCP KCKGVFVTSQ LFAAHMGSHY KYESAEQRRR RHLAKYGRKK  360
HLRLVNSTGG LTVVPDQTQP LKEAAPARTE SKIISTEVVD EKKESGLEIV PGGSQLEGLH  420
DIPIKEESLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	360	RRRRHLAKYGRKK
2	357	364	GRKKHLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	1e-23	C2H2 family protein