PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON47518.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

CO-like

Protein Properties

Length: 385aa MW: 41365.2 Da PI: 5.6018

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON47518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26	1.8e-08	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ PON47518.1 60 VWVCEVCEQAPAAVTCKADAAALCVSCDADIHSAnplaqrHDRVPV 105 689*****************************66899999999986 PP
2	CCT	69.6	7.8e-24	308	351	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PON47518.1 308 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 351 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MGLIGNGGDG GWSLAAKPCD SCKSAGSAAV FCRADSAFLC LSCDAKIHCA NKLASRHGRV 60 WVCEVCEQAP AAVTCKADAA ALCVSCDADI HSANPLAQRH DRVPVEPFFD PADSIVHSSA 120 AALNFFADRR GGACHHDEDV DVEVEPPSPW VISNPNFASK IMAETVAAGP DVKSDHLFFS 180 EMDSFLDFDY PNPIHPSSGT DSVVPVKIKP NSPPSPVING SENCFDIDFC RSKLSSFNYV 240 AQCLSHSVSS SSLDVGVVPD GNSMSEISYS FGRSEMNQTS NSSDPLPSVS ASTNSNSAPA 300 TQLCGLDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TEIETETDPD 360 LDPIYGSAAA AAFIADSQYG VVPTF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MGLIGNGGDG GWSLAAKPCD SCKSAGSAAV FCRADSAFLC LSCDAKIHCA NKLASRHGRV  60
WVCEVCEQAP AAVTCKADAA ALCVSCDADI HSANPLAQRH DRVPVEPFFD PADSIVHSSA  120
AALNFFADRR GGACHHDEDV DVEVEPPSPW VISNPNFASK IMAETVAAGP DVKSDHLFFS  180
EMDSFLDFDY PNPIHPSSGT DSVVPVKIKP NSPPSPVING SENCFDIDFC RSKLSSFNYV  240
AQCLSHSVSS SSLDVGVVPD GNSMSEISYS FGRSEMNQTS NSSDPLPSVS ASTNSNSAPA  300
TQLCGLDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TEIETETDPD  360
LDPIYGSAAA AAFIADSQYG VVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-108	CO-like family protein