PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON47193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | C2H2 | ||||||||
Protein Properties | Length: 482aa MW: 52836.2 Da PI: 5.7583 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.5e-05 | 153 | 173 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp+C k+F++ L H+r+H PON47193.1 153 CPICFKTFPSIKALFGHMRSH 173 ********************9 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 444 | 466 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H++ H PON47193.1 444 YVCSVCKRSFPSYQALGGHMSIH 466 9*******************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence |
MDQELGSCDH QEISMEASTV KTSGAASNGR LCLKLKIPKP EPNKDNYEVK EEEEEEEKEK 60 EDEDEEDQEL VALLPSKCQV CHKRFKSGKA LGGHKRMHNQ QAAAATTTTS TTGLTNKINS 120 ISISSRTNAN FKATKESSAP SGSTASSSCT NICPICFKTF PSIKALFGHM RSHPERTWRG 180 IEPPKPTTTT TTTTTSLPPL IPTKPTCSSI SSTTDHPHHH QHDLDDDQNN NNVIHSTAAA 240 AADDPLVTKT WAVTAKRGRK SLASSTTSTA AASAITASAS RDDDDDDDDD DEEDDDDDSG 300 GCSGLEERMN EAVLDLMMLA RASPANTNYN NRPPAPPKDH KKNIIKKRKF AKEEDEMVDE 360 DEDDEDYNSD SSNSSSQNSI LNWKLRMRKS RRKMKLVDDI DQLDLDLDPA PPQAEEKKKP 420 KPKPKQPNAL VTKAISSSCS TSKYVCSVCK RSFPSYQALG GHMSIHNKIA XLQLQGGFSI 480 LI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 388 | 421 | RKSRRKMKLVDDIDQLDLDLDPAPPQAEEKKKPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 4e-12 | C2H2 family protein |