PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON45296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9285.91 Da    PI: 10.3946
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON45296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.5e-30958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krie+ks rqvtfskRr g++KKA ELSvLCd++va+iifss+g+lye++
  PON45296.1  9 KRIEDKSSRQVTFSKRRSGLIKKARELSVLCDIDVALIIFSSRGRLYEFA 58
                79***********************************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MGRKKVELKR IEDKSSRQVT FSKRRSGLIK KARELSVLCD IDVALIIFSS RGRLYEFANG  60
TEYVSLSLYL FNLLSVWLIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.44e-28MIKC_MADS family protein