PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON45293.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27958.9 Da PI: 8.9878

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON45293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PON45293.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	92	1.1e-30	86	174	11	99
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ea + s+qqe+ kLk+++e+L r++R+l+Ge+L+ Ls keL++Le+qL+ slk+iRs++++ +l+q+ +lq+ke+ l+e+nk+L++kl PON45293.1 86 EALELSSQQEYLKLKARYETLLRNHRNLMGEELGALSSKELESLERQLDMSLKQIRSTRTQCMLDQLTDLQRKEHLLNETNKTLKQKLV 174 4555689*******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKSNYGAPEP NVSTREALEL SSQQEYLKLK ARYETLLRNH RNLMGEELGA 120 LSSKELESLE RQLDMSLKQI RSTRTQCMLD QLTDLQRKEH LLNETNKTLK QKLVEGYQLS 180 SLQLNPSGAD DVGYGRQPPQ PQGDVFYHPL ELEPTLQIGY QVDSTISVVT AGPSMNNYMP 240 VGWLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-120	MIKC_MADS family protein