PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON44485.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

HD-ZIP

Protein Properties

Length: 351aa MW: 38656.1 Da PI: 8.6912

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON44485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	207	261	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k PON44485.1 207 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTK 261 678899***********************************************98 PP
2	HD-ZIP_I/II	127.2	7e-41	207	297	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PON44485.1 207 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELHELR-ALK 297 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MELALSLGDT STPFSFLDKA QKMTLNNKAE LGFCMALGSS LSTTSRSSSS SEDQKKDHHD 60 HHRDLIRSTR KASSSSDLVQ IPLQLDLLPS APVPRSQTGS QPRFSWLAAK LVTSEPAGSS 120 DNMNIGPGKG FDVNRLPAVE ATPEETEDGI TISSPNSTLS SFHMDFCVRS SSSGRNNNSA 180 KRDHTMEGET ERASSRASDD EENGSTRKKL RLSKDQSAFL EESFKEHSTL NPKQKLALAR 240 QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL HELRALKTSQ 300 PFYMQLPATT LTMCPSCERV ATAGAGSGPA SNSGNSTILP FSNNRVGKAA S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MELALSLGDT STPFSFLDKA QKMTLNNKAE LGFCMALGSS LSTTSRSSSS SEDQKKDHHD  60
HHRDLIRSTR KASSSSDLVQ IPLQLDLLPS APVPRSQTGS QPRFSWLAAK LVTSEPAGSS  120
DNMNIGPGKG FDVNRLPAVE ATPEETEDGI TISSPNSTLS SFHMDFCVRS SSSGRNNNSA  180
KRDHTMEGET ERASSRASDD EENGSTRKKL RLSKDQSAFL EESFKEHSTL NPKQKLALAR  240
QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL HELRALKTSQ  300
PFYMQLPATT LTMCPSCERV ATAGAGSGPA SNSGNSTILP FSNNRVGKAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	212	TRKKLRL
2	256	264	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-91	HD-ZIP family protein