PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON44440.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 543aa MW: 58482.5 Da PI: 8.9268

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON44440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	68	88	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H PON44440.1 68 CEICGKGFQRDQNLQLHRRGH 88 *******************88 PP
2	zf-C2H2	13.3	0.00026	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PON44440.1 142 WKCEKCSKRYAVQSDWKAHSKTC 164 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MAEEKIPNGF SQNPIEGSNN IMINPPPLKK KRNLPGTPGK FSFMYVYPEA EVIALSPKTL 60 MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EPKKRVYVCP EKTCVHHHPS 120 RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAEETARV KAASDMNIMN PIMAAAGNIS YHFMGAGSGP NFPSVFKPIS 240 SNDEAAATAR GLSLWIGGQD QTIMGSPNTT NNALQDEIRH HNHHHHQLGS VSSASAVFGP 300 DHNHHPLVSC CSSNHPPPSD YHHHQMNWVF GSSTNKISSN NNAHHEELTI SDTCSLPMSN 360 STVNKEGGNG TQLVSVPSLY STQLSSTNSH NSAAAAAANM SATALLQKAA QIGATSSVDT 420 SFLGSLGLKC NNSTTSTNTQ VRDGNNNIKS CGLYGSTPIS GVGSHRNIND NNVENPDGEI 480 LQMYPPAAKR RHVLVSSSTA EEAAGGQTRD FLGVGGGGGG VQPICHPAAA AAAAAASSIN 540 GWI

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MAEEKIPNGF SQNPIEGSNN IMINPPPLKK KRNLPGTPGK FSFMYVYPEA EVIALSPKTL  60
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EPKKRVYVCP EKTCVHHHPS  120
RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEETARV KAASDMNIMN PIMAAAGNIS YHFMGAGSGP NFPSVFKPIS  240
SNDEAAATAR GLSLWIGGQD QTIMGSPNTT NNALQDEIRH HNHHHHQLGS VSSASAVFGP  300
DHNHHPLVSC CSSNHPPPSD YHHHQMNWVF GSSTNKISSN NNAHHEELTI SDTCSLPMSN  360
STVNKEGGNG TQLVSVPSLY STQLSSTNSH NSAAAAAANM SATALLQKAA QIGATSSVDT  420
SFLGSLGLKC NNSTTSTNTQ VRDGNNNIKS CGLYGSTPIS GVGSHRNIND NNVENPDGEI  480
LQMYPPAAKR RHVLVSSSTA EEAAGGQTRD FLGVGGGGGG VQPICHPAAA AAAAAASSIN  540
GWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-130	C2H2 family protein