PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON43361.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

CO-like

Protein Properties

Length: 478aa MW: 53860.3 Da PI: 4.629

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON43361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.4	3e-08	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k++++fC ++ +lC+ C + H+ H++v PON43361.1 16 ARACDSCLWKRARWFCAADDAFLCQACDASVHSAnqlasrHQRV 59 578*****************************667888888876 PP
2	CCT	69.7	7.4e-24	407	450	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrktR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PON43361.1 407 REARVSRYREKRKTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 450 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MITEKKAANA MTGKTARACD SCLWKRARWF CAADDAFLCQ ACDASVHSAN QLASRHQRVR 60 LQTSSLIKGG NEESSLSSSS PAWHRGFTRK ARTTRHKAKQ AKELGGDNND EDSVLMNHQP 120 LPFVPEMSNE EGDDKSPNYD ENEDEEQLLY RVPVFDPFAA ELCNPTVDDD HDHHHDTTEL 180 TVAVDHDQFG KDGSDIMDHH EVLGFLPSEL ELAEFAADVE SLLGGGGGLE EEYSCDHDVK 240 GFGIMELLGC KEEEEENIAA KARVKLEDEE DNQAMLMEEA LACEVNPYAC FNEKFDYDEL 300 SSVREGEEEE EEEEEEEEEE GKVVIKNEIG SDGKMAVKRD ILLRLNYEAV IAAWASQGSP 360 WTTGTRPEVN PDHAWPDHMD TWRVNNGRNA NGDLIRGAGG STDIEGREAR VSRYREKRKT 420 RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT SSMSPNSSTN TTSTSTTFHF NNQIIMNK

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MITEKKAANA MTGKTARACD SCLWKRARWF CAADDAFLCQ ACDASVHSAN QLASRHQRVR  60
LQTSSLIKGG NEESSLSSSS PAWHRGFTRK ARTTRHKAKQ AKELGGDNND EDSVLMNHQP  120
LPFVPEMSNE EGDDKSPNYD ENEDEEQLLY RVPVFDPFAA ELCNPTVDDD HDHHHDTTEL  180
TVAVDHDQFG KDGSDIMDHH EVLGFLPSEL ELAEFAADVE SLLGGGGGLE EEYSCDHDVK  240
GFGIMELLGC KEEEEENIAA KARVKLEDEE DNQAMLMEEA LACEVNPYAC FNEKFDYDEL  300
SSVREGEEEE EEEEEEEEEE GKVVIKNEIG SDGKMAVKRD ILLRLNYEAV IAAWASQGSP  360
WTTGTRPEVN PDHAWPDHMD TWRVNNGRNA NGDLIRGAGG STDIEGREAR VSRYREKRKT  420
RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT SSMSPNSSTN TTSTSTTFHF NNQIIMNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	434	RKTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-78	CO-like family protein