PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42092.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

M-type_MADS

Protein Properties

Length: 486aa MW: 52313.2 Da PI: 8.7874

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.9	3.6e-15	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+ +f kRr+g+lKK +ELS+LC++ + ++i+s+ PON42092.1 11 IGNDTSRKASFKKRRAGLLKKVSELSTLCGVSAFIVIYSP 50 789***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MTRRKIRLAW IGNDTSRKAS FKKRRAGLLK KVSELSTLCG VSAFIVIYSP GESDPPTVWP 60 SVEVARQLYE RFISVPDIER CKKMVNQEGY LRERATKMAE QLRKQHRKNR EKMTCHVMRQ 120 VEDGKPLNEF ETSELGSVVW VLEEKMKEIK RRIEYYDQTV GIQPPGSLLL PPPMIPMEEL 180 LMGDQSWESF FGGIMSNLNN YNNNIVNTNN NSLVLRGIDQ GNSVRMQVPE QRLFLGGTST 240 LGTTSLGSNY NTVQPFYGAG ISSSSSSSSG GTGNGLGFQP YVSHQSFGNN INNNNIVISN 300 DQMGLGNFGY FGSRGGSQII PGGFNDMGLA PQQLNLGGIN NNLRGTSTQG MGNITCTSIT 360 SVQNPNFGLN VGSGGVNENV GFGLHSSRGS TLGGNNDIGN VTNNSFNQYF AFNGGNNAGV 420 VGQGQENNQG YQSNNGGSSN VSGGDAGKNM PSGLLSGASG GTSTAGSDDA AGLPYDFSKN 480 WHSLLQ

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MTRRKIRLAW IGNDTSRKAS FKKRRAGLLK KVSELSTLCG VSAFIVIYSP GESDPPTVWP  60
SVEVARQLYE RFISVPDIER CKKMVNQEGY LRERATKMAE QLRKQHRKNR EKMTCHVMRQ  120
VEDGKPLNEF ETSELGSVVW VLEEKMKEIK RRIEYYDQTV GIQPPGSLLL PPPMIPMEEL  180
LMGDQSWESF FGGIMSNLNN YNNNIVNTNN NSLVLRGIDQ GNSVRMQVPE QRLFLGGTST  240
LGTTSLGSNY NTVQPFYGAG ISSSSSSSSG GTGNGLGFQP YVSHQSFGNN INNNNIVISN  300
DQMGLGNFGY FGSRGGSQII PGGFNDMGLA PQQLNLGGIN NNLRGTSTQG MGNITCTSIT  360
SVQNPNFGLN VGSGGVNENV GFGLHSSRGS TLGGNNDIGN VTNNSFNQYF AFNGGNNAGV  420
VGQGQENNQG YQSNNGGSSN VSGGDAGKNM PSGLLSGASG GTSTAGSDDA AGLPYDFSKN  480
WHSLLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RRKIRLAWIGNDTSRKASFKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	7e-29	M-type_MADS family protein