PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON40678.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

Trihelix

Protein Properties

Length: 734aa MW: 80825.5 Da PI: 5.391

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON40678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.5	4.4e-29	74	158	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++ g++rs k+Ckek+en++k+yk++keg+ +r ++ +t+++f++lea PON40678.1 74 RWPRQETLALLKVRSDMDAAFRDATLKGPLWEDVSRKLAVLGYHRSGKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYKFFTELEA 158 8******************************************************************98..56667****985 PP
2	trihelix	105.1	5e-33	461	546	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evl+Li++r+ +e++++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a PON40678.1 461 RWPKAEVLELIKLRSGLETKYQEAGPKGPLWEEISAEMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFNELDA 546 8*******************************************************************8.99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MQRGQEEGGM SSTDDMSTSG GGGELTEQAG QQLPVEEASP ISSRPPAASV NLDHEFMSLS 60 SAGAGGSGGG GGNRWPRQET LALLKVRSDM DAAFRDATLK GPLWEDVSRK LAVLGYHRSG 120 KKCKEKFENV HKYYKRTKEG RAGRQDGKTY KFFTELEALH GTAANQPQPH QLPPPPPHPH 180 VSAVSIGISN PMPISSLRAS PNVHSATTSH LPPPYSTTAT PAPAPAPAPA PPSFSSNSSS 240 SSPGSEEDDD DNDLEGGEPS NAAGSSRKRK RDWSSSSTMM EFFENLMKQV MHKQEAMQQR 300 FLEVIEKREQ DRMIKEEAWK RQEMARLTRE HQLMAQERAI SASRDAAIVS FLQKITGQTI 360 QLPDPPPPPP PLNKNNNYIH NVVNVHAAPP PHPAVSPPAP APSVAAAPVI AQQHDNQLVV 420 QSADWYHPPV STGQQQQQQL AAEQQEHTHT FTGGASSSSS RWPKAEVLEL IKLRSGLETK 480 YQEAGPKGPL WEEISAEMQR MGYKRSAKRC KEKWENINKY FKKVKESNKK RPEDAKTCPY 540 FNELDALYRK KILGSGASYN QMNRAEQQQQ EHNISATVEP PRESRSDMRP ITALTAEQVK 600 PPAANIGAEN KIDGAETSNF GEAAKEPEDI VMELMEVDDQ DRCGGTQAGL VVPQQQQTLL 660 VNDYDRIEEL ADSHDDDEED EDEEEDTDDE DQLQVERKMA NYKLQLQRQT SSTGPSKNGA 720 GNETTPSSFL AMVQ

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MQRGQEEGGM SSTDDMSTSG GGGELTEQAG QQLPVEEASP ISSRPPAASV NLDHEFMSLS  60
SAGAGGSGGG GGNRWPRQET LALLKVRSDM DAAFRDATLK GPLWEDVSRK LAVLGYHRSG  120
KKCKEKFENV HKYYKRTKEG RAGRQDGKTY KFFTELEALH GTAANQPQPH QLPPPPPHPH  180
VSAVSIGISN PMPISSLRAS PNVHSATTSH LPPPYSTTAT PAPAPAPAPA PPSFSSNSSS  240
SSPGSEEDDD DNDLEGGEPS NAAGSSRKRK RDWSSSSTMM EFFENLMKQV MHKQEAMQQR  300
FLEVIEKREQ DRMIKEEAWK RQEMARLTRE HQLMAQERAI SASRDAAIVS FLQKITGQTI  360
QLPDPPPPPP PLNKNNNYIH NVVNVHAAPP PHPAVSPPAP APSVAAAPVI AQQHDNQLVV  420
QSADWYHPPV STGQQQQQQL AAEQQEHTHT FTGGASSSSS RWPKAEVLEL IKLRSGLETK  480
YQEAGPKGPL WEEISAEMQR MGYKRSAKRC KEKWENINKY FKKVKESNKK RPEDAKTCPY  540
FNELDALYRK KILGSGASYN QMNRAEQQQQ EHNISATVEP PRESRSDMRP ITALTAEQVK  600
PPAANIGAEN KIDGAETSNF GEAAKEPEDI VMELMEVDDQ DRCGGTQAGL VVPQQQQTLL  660
VNDYDRIEEL ADSHDDDEED EDEEEDTDDE DQLQVERKMA NYKLQLQRQT SSTGPSKNGA  720
GNETTPSSFL AMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-47	Trihelix family protein