PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON40659.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 334aa MW: 37413.7 Da PI: 6.3805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON40659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++sF + L H++ H PON40659.1 4 HRCKLCHRSFANGRALGGHMKAH 26 79******************998 PP
2	zf-C2H2	12.9	0.00033	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H PON40659.1 266 FQCPYCYKVFGSGQALGGHKRSH 288 89***************999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MERHRCKLCH RSFANGRALG GHMKAHLATL PLPPKTSTAI DPPSSSSYSS PQEEEEEQEQ 60 EVEVEVEEAE AEVEEEDKAL AYGLRENPKK SFRLADPEFS FAVDAGSVIQ DRESETESSR 120 NPTRRRSKRN RRPFVAAETK NAKLRRSSWV DSLAEPEPVS SVSDTSPEED VAMCLMMLSR 180 DVWMRVDSEE QDHHKTIIRA VNGPQQQEQE QEIVKLKRVG AKQKHRCEKC NKVFRSHQAM 240 CGHKKICFRN EIEAKNAGFG ADDKIFQCPY CYKVFGSGQA LGGHKRSHGH QLNSATSTGA 300 ISSSNFSGKQ KEGLIDLNLP APLEEDDFSV LSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	132	RNPTRRRSKRNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-43	C2H2 family protein