PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON40464.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 534aa MW: 55520.5 Da PI: 8.9277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON40464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PON40464.1 70 FVCEICKKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	15.6	4.5e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ PON40464.1 146 WKCERCSKKYAVQSDWKAHMKTC 168 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MGELLENSSP VAVSTASAGD VSVSSSGYQT TPLPVEVVPP KKKRNLPGMP DPDAEVIALS 60 PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLRQ RTTKEVRKRV YVCPEASCVH 120 HNPARALGDL TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL 180 FSRRDSFITH RAFCDALAEE SARSHQTLAI SSEAGNPNAK VVVASPPPPP LTPSTTVVSP 240 ALSIQSSELP ENAIGLSPPT QAASTCLTTN ATAISICSSS NCSSTSTVFA SIFAPSSVAA 300 VTQPPQTSAN SSFSNLMGRS HCSTTLPTVA ALEPTSLSLS TSLYLSNNGG SSLFQAPDQP 360 EHRLFAPSAP QPAAMSATAL LQKAAQMGAA ASNASLLCSF GLTTSSSSSP SGKDSVASQW 420 NGTEIKQESV ASSVAAGLGL GLHSGGNSGL TDLVMGPALT FGSRPMTRDL LGLSMGGGGG 480 ASTGGLSALL NSFGGSGGFD ITAPSSYGGG GGRSSSRDTW EGPPERKTNG SALL

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MGELLENSSP VAVSTASAGD VSVSSSGYQT TPLPVEVVPP KKKRNLPGMP DPDAEVIALS  60
PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLRQ RTTKEVRKRV YVCPEASCVH  120
HNPARALGDL TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAEE SARSHQTLAI SSEAGNPNAK VVVASPPPPP LTPSTTVVSP  240
ALSIQSSELP ENAIGLSPPT QAASTCLTTN ATAISICSSS NCSSTSTVFA SIFAPSSVAA  300
VTQPPQTSAN SSFSNLMGRS HCSTTLPTVA ALEPTSLSLS TSLYLSNNGG SSLFQAPDQP  360
EHRLFAPSAP QPAAMSATAL LQKAAQMGAA ASNASLLCSF GLTTSSSSSP SGKDSVASQW  420
NGTEIKQESV ASSVAAGLGL GLHSGGNSGL TDLVMGPALT FGSRPMTRDL LGLSMGGGGG  480
ASTGGLSALL NSFGGSGGFD ITAPSSYGGG GGRSSSRDTW EGPPERKTNG SALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2 family protein