PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON40334.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

GRF

Protein Properties

Length: 619aa MW: 66413.2 Da PI: 7.0918

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON40334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	239	283	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PON40334.1 239 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 283 79****************************************985 PP
2	QLQ	56.6	7.7e-20	170	205	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll++++k PON40334.1 170 PFTPSQWIELEHQALIYKYITSNVPVPSNLLLPLKK 205 9********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MDFGLVSLES LVATSHEGGN GGGGGVHSQL NDSETTPSKG IIGSGFVKQE QFEPGEDDWK 60 SSKVAKTVDL SASKTMPLHH GSAPLFRSNS SLFHGEPTSQ QEHMLSFSSN KSEGSFLSKD 120 CSTGIMERAS QNSAFPYYQR SQPSCSRNAG YGSGSLNAGR HVPFTGVRAP FTPSQWIELE 180 HQALIYKYIT SNVPVPSNLL LPLKKSLNPY VLTGSSAVSL PPNSLGWGSF HLGFADNTDP 240 EPGRCRRTDG KKWRCSRDAV ADQKYCERHI NRGRHRSRKP VEGQTGHAAS GTTNSKVAQM 300 TTSVSTSAMP GGGGGGASSS LAITQHQLKG LQSGAATNPS ADTLVNRRQD LRGGLYALSS 360 SNVDLKSSES TFNVLKQEIP PGEISQSEFG LVSTDSLLNP SQENSYINSK NYAAFLDFSG 420 QETQDQHHPL RHFIDDWPKD QSNRSIITWP EEMKSDWTQL SMSIPVTSSE FSSSTNSPTR 480 QEKIALSPLR LSRENEPMQT NLGVNNDGSE ATRKQTNWVP ISWGSSLGGP LGEVLTNTAG 540 NVKACKNPPS LNLLTEGWDG SPQLGSSPTG VLQKSTFCSL SNSSSGSSPR ADNKKNIDEA 600 SVFDDVLGST LASSSVPYL

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MDFGLVSLES LVATSHEGGN GGGGGVHSQL NDSETTPSKG IIGSGFVKQE QFEPGEDDWK  60
SSKVAKTVDL SASKTMPLHH GSAPLFRSNS SLFHGEPTSQ QEHMLSFSSN KSEGSFLSKD  120
CSTGIMERAS QNSAFPYYQR SQPSCSRNAG YGSGSLNAGR HVPFTGVRAP FTPSQWIELE  180
HQALIYKYIT SNVPVPSNLL LPLKKSLNPY VLTGSSAVSL PPNSLGWGSF HLGFADNTDP  240
EPGRCRRTDG KKWRCSRDAV ADQKYCERHI NRGRHRSRKP VEGQTGHAAS GTTNSKVAQM  300
TTSVSTSAMP GGGGGGASSS LAITQHQLKG LQSGAATNPS ADTLVNRRQD LRGGLYALSS  360
SNVDLKSSES TFNVLKQEIP PGEISQSEFG LVSTDSLLNP SQENSYINSK NYAAFLDFSG  420
QETQDQHHPL RHFIDDWPKD QSNRSIITWP EEMKSDWTQL SMSIPVTSSE FSSSTNSPTR  480
QEKIALSPLR LSRENEPMQT NLGVNNDGSE ATRKQTNWVP ISWGSSLGGP LGEVLTNTAG  540
NVKACKNPPS LNLLTEGWDG SPQLGSSPTG VLQKSTFCSL SNSSSGSSPR ADNKKNIDEA  600
SVFDDVLGST LASSSVPYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-105	GRF family protein