PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON39946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 129aa MW: 15068.1 Da PI: 5.7122 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.1 | 1.5e-15 | 4 | 50 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+++ r +tfskR+ gi KKA+EL +LC+ ev + fs++gk + y PON39946.1 4 IQDENDRLITFSKRKSGIYKKANELFTLCEGEVGFVTFSPSGKPFSY 50 889999************************************96665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence |
MRIIQDENDR LITFSKRKSG IYKKANELFT LCEGEVGFVT FSPSGKPFSY GNPSIDSVGE 60 RLLLDQTTEV TMTDVTTHPI MEVHREMRIN NLNQKYNNLY SHMEVEKERQ QSLQKMPLEA 120 PDELWKRID |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-28 | M-type_MADS family protein |