PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON39945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 265aa MW: 29723.3 Da PI: 9.7106 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 24 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ r +tfskRr gi KKA+EL +LC+aev v+ifs++gk + y PON39945.1 24 KMIQDEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPSGKPFSY 72 57999999************************************96655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence |
MAANNNNNNN KNKKTKGRQK IEMKMIQDED DRLITFSKRR SGIYKKASEL VTLCGAEVGV 60 VIFSPSGKPF SYGHPSIDAV SHRLLSNQPN LRPLPHTAAV VDATTHPIVE AHRRIRINKL 120 NQQYDDMFDH LEAEKERMKE MEKVTLGETE KVAVAPKGWW DAPIEGLSLD ELKQKQRSLE 180 ELHANISKRI TMSLSSFNNN NKNNNALAPR ASSSFYAGNI HGSSSSQRAE PFVYRPSTTG 240 LHYPHSEHGY GYGHVYSGDL GPNQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-34 | M-type_MADS family protein |