PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON39945.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 265aa    MW: 29723.3 Da    PI: 9.7106
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON39945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-182472149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++  r +tfskRr gi KKA+EL +LC+aev v+ifs++gk + y
  PON39945.1 24 KMIQDEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPSGKPFSY 72
                57999999************************************96655 PP

Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MAANNNNNNN KNKKTKGRQK IEMKMIQDED DRLITFSKRR SGIYKKASEL VTLCGAEVGV  60
VIFSPSGKPF SYGHPSIDAV SHRLLSNQPN LRPLPHTAAV VDATTHPIVE AHRRIRINKL  120
NQQYDDMFDH LEAEKERMKE MEKVTLGETE KVAVAPKGWW DAPIEGLSLD ELKQKQRSLE  180
ELHANISKRI TMSLSSFNNN NKNNNALAPR ASSSFYAGNI HGSSSSQRAE PFVYRPSTTG  240
LHYPHSEHGY GYGHVYSGDL GPNQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-34M-type_MADS family protein