PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON39943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24208.4 Da PI: 9.8039 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.1 | 1.7e-16 | 27 | 75 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i ++ r +tfskR+ gi KKA+EL +LC+ ev i fs++gk + y PON39943.1 27 KMIRDENDRLTTFSKRKSGIYKKANELVTLCGGEVGFITFSPSGKPFSY 75 57899999************************************96665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MEANPTTNHN QKPNKKQTKG KQKIEMKMIR DENDRLTTFS KRKSGIYKKA NELVTLCGGE 60 VGFITFSPSG KPFSYGNPSI DSVIAERLLL DQTTKLTMTD VTTHPIMEVH REMRINNLNQ 120 KYNNLYSHME VEKERQQSLQ KMPTEAPDEL WEGSIEGLSL EELKQRQRFL EELHANISNH 180 VKERMSRSWN IFNNKNNNIS TPAATPRSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-24 | M-type_MADS family protein |