PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON39940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20314.3 Da PI: 10.2017 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.8e-21 | 11 | 55 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ++ +s rqvtfskRr+g++KKA+EL +LC+aev v++fs+ gk + PON39940.1 11 VKGSSCRQVTFSKRRTGLFKKANELATLCGAEVGVVVFSPGGKPF 55 567899**********************************99855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MGRRKIEMKM VKGSSCRQVT FSKRRTGLFK KANELATLCG AEVGVVVFSP GGKPFSFGQP 60 NVESIADRFL NQEPKTTTTT ASSSSSRKKN NKTMEKLNQQ LNDCVKQLHE EKLRGEALDK 120 GIAEAKGLFF ANNSTEELGA TELAKLKAGM EELRERVKER VGEMEASSIL LMLSNNVVGP 180 PEKSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-42 | M-type_MADS family protein |