PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON36762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 286aa MW: 31976.2 Da PI: 5.0411 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.3 | 1.2e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tgk PON36762.1 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLMFSPTGK 53 689*****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence |
MGRLKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLMFSP TGKPTLYQGE 60 RSNFDEVITK FSQLTPQERT KRKLESLEAL KKTFKKLDHE VNIQDFLGSS SQTVEFQCEM 120 SLPLMVGGVQ EAQPLPWIPN NENQPLMLPN EPNFLPHGEV QCAAEASLSG CSSYFTNGSG 180 KQMEVDDPGQ LSNIEQGGCS LDELSRSAGL SLDFGEQYSY PCLPNDKNLK PNMEMNLQAT 240 PVDYQVNNNC ELPTSLYDNP QHAWVSGFGP CGLALYNENA CQQQLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 5e-62 | M-type_MADS family protein |