PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON35662.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 418aa MW: 45496.5 Da PI: 7.5008

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON35662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PON35662.1 164 YECKTCNRTFPSFQALGGHRASH 186 99**********99999998887 PP
2	zf-C2H2	12.8	0.00037	265	287	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PON35662.1 265 HECSICGAEFTSGQALGGHMRRH 287 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MEATAQEDVI TVSKEQTGLV VNKGKRTKRQ RPQSPLPFAA LATNSSTGNG GGSDNDDNNN 60 NNNNNRNANS PSPATSAEIQ DSTEEEDQDM ATCLILLAQG HSRQSPPPPK QLSPPDAAAA 120 AAAEDGGGGF GAYTKHNSRK FLEAIQAPSP PGNNIKAAAG YYVYECKTCN RTFPSFQALG 180 GHRASHKKPK AAVADQTVML ENKRNHHLFG LPSDDEDQTQ LIKTNNNNNN NISSTALSLQ 240 LSNNRSSTNL YGSSTNFINK ANKVHECSIC GAEFTSGQAL GGHMRRHRAP VGTTTTSTAL 300 SLTTTTNTTT TAATTTQLMA LDHQPNDNDH DNHNHNQRHR HHHQQQQQAN KTRNVLSLDL 360 DLNLPAPEDN QQEPKFGFVA KQQQQQQQQQ QQQQQQQQKQ QQSSTLVFSA PALVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MEATAQEDVI TVSKEQTGLV VNKGKRTKRQ RPQSPLPFAA LATNSSTGNG GGSDNDDNNN  60
NNNNNRNANS PSPATSAEIQ DSTEEEDQDM ATCLILLAQG HSRQSPPPPK QLSPPDAAAA  120
AAAEDGGGGF GAYTKHNSRK FLEAIQAPSP PGNNIKAAAG YYVYECKTCN RTFPSFQALG  180
GHRASHKKPK AAVADQTVML ENKRNHHLFG LPSDDEDQTQ LIKTNNNNNN NISSTALSLQ  240
LSNNRSSTNL YGSSTNFINK ANKVHECSIC GAEFTSGQAL GGHMRRHRAP VGTTTTSTAL  300
SLTTTTNTTT TAATTTQLMA LDHQPNDNDH DNHNHNQRHR HHHQQQQQAN KTRNVLSLDL  360
DLNLPAPEDN QQEPKFGFVA KQQQQQQQQQ QQQQQQQQKQ QQSSTLVFSA PALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10470.1	2e-44	C2H2 family protein