PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON35633.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9373.95 Da    PI: 8.7606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON35633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.3e-151157651
                HHHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgklyeyss 51
                + + ++tfs  r g++KKA  LSvL C +++a++ifs +g+lye+s+
  PON35633.1 11 QEKSHITFSMCRDGLIKKARNLSVLfCYIDAALLIFSDQGHLYEFSN 57
                56789*******************99*******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    
MNGGALTSRG QEKSHITFSM CRDGLIKKAR NLSVLFCYID AALLIFSDQG HLYEFSNIND  60
VELFDLKGTR MSIMRHIMTA AMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-10MIKC_MADS family protein