PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON35410.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

AP2

Protein Properties

Length: 413aa MW: 46779.8 Da PI: 6.4198

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON35410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.5	5e-16	74	133	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g PON35410.1 74 SKYRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 133 89*****************888855555447***********************98 PP
2	AP2	52.3	1.4e-16	176	227	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PON35410.1 176 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 227 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MELMMVKNED QNSSTRRRRL NMADGDAQSA IRCVKRRRRD IPTEVSCDDN KQSTQQQAQA 60 DDQTSPATTV KRSSKYRGVS RHRWTGRYEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA 120 ARAYDLAALK YWGTSTFTNF PISDYEKEIE IMQTVTKEEY LASLRRKSSG FSRGVSKYRG 180 VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSTYI 240 RWLKPEAAGN LVTGLESLPE VVTEPQTLRS TANYGAPTDQ DQFSNPNPFM TSDNDYLNKY 300 SPTPPKQQVV FQSKSPLIGS TACKSSSPTA LGLLLRSSIF RELVEKNSNV SEDETDGDEP 360 KNQLQGGCSD DDEYGGFFFD GITDIPFVCG SNRSESIQLE EEKELHFVLS DHS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MELMMVKNED QNSSTRRRRL NMADGDAQSA IRCVKRRRRD IPTEVSCDDN KQSTQQQAQA  60
DDQTSPATTV KRSSKYRGVS RHRWTGRYEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA  120
ARAYDLAALK YWGTSTFTNF PISDYEKEIE IMQTVTKEEY LASLRRKSSG FSRGVSKYRG  180
VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSTYI  240
RWLKPEAAGN LVTGLESLPE VVTEPQTLRS TANYGAPTDQ DQFSNPNPFM TSDNDYLNKY  300
SPTPPKQQVV FQSKSPLIGS TACKSSSPTA LGLLLRSSIF RELVEKNSNV SEDETDGDEP  360
KNQLQGGCSD DDEYGGFFFD GITDIPFVCG SNRSESIQLE EEKELHFVLS DHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	38	RRRRLNMADGDAQSAIRCVKRRR
2	17	39	RRRRLNMADGDAQSAIRCVKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-94	AP2 family protein