PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON31222.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 373aa    MW: 42258.8 Da    PI: 8.6407
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON31222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.5e-171249441
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                  +  r vtf kR++g++KKA+ELS+LC+++v++i+  
  PON31222.1 12 AKEKSRRVTFEKRKKGLIKKAKELSTLCEVRVCLIVHN 49
                5567899****************************964 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MGRGKLPLRL IAKEKSRRVT FEKRKKGLIK KAKELSTLCE VRVCLIVHNV KNGSLDTPST  60
FPQHPSEVRP LVEAYEVARI QNPTSRRHLK MSDFFAERIK KLNTEKEKLH QQTNDLTQKT  120
HGNYRDKLPM WQSFIDELSA NHVFELHSFL KDKVEQVEKH MRFRSNQFAT QEQQMNMFQP  180
SFQYYSSHHD HAAAANYQMY GQLPFYYPPQ PWIHHDQSSF SKISFDINDP HYNGSFTRML  240
NSGAATDDHY QSYGSSNSAS SSVLLGGPGD DYNMRCIMFN MSSTGPPMLG CGMQQGDQNG  300
MAMFSNNPMA LQPYVQQPLL PLLASTSAAE SLYCPTMELI RGQSPAEPMA AAVSSGHGGQ  360
ILNGSDQAEV KYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11326KEKSRRVTFEKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.16e-15MIKC_MADS family protein