PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17580.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 855aa    MW: 93110 Da    PI: 6.3499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17580.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-183087457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  ONIVA12G17580.2 30 YVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                     6789****************************************************97 PP
2START170.88.9e-541783852204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++++ vi +g  g+++l
  ONIVA12G17580.2 178 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIEL 270
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+
  ONIVA12G17580.2 271 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRP 364
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  ONIVA12G17580.2 365 LYESPKILAQKMTIAALRHIR 385
                      ****************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    
MAAAAVGGRG ERLSSSSPTA AAPQVDAGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LNAMNKLLME ENDRLQKQVS  120
RLVYENGYMR TQLHNPSAAT TDTSCESVVT SGQHHQQQNP AVLHPQRDAN NPAGLLAIAE  180
ETLAEFMSKA TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCVDIIHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS  300
LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE  360
VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEIPYGAG RQPAVFRTFS QRLSRGFNDA  420
VSGFPDDGWS LLSSDGSEDI TISVNSSPNK LVGSHVSPNP LFSTVGGGIL CAKASMLLQN  480
VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL RTSGFMGSQV ILPLAHTLEH  540
EEFLEVIRLE GHGFSHDEVL LSRDMYLLQL CSGVDENATS ASAQLVFAPI DESFADDAPL  600
LPSGFRVIPL DTKMDGPSAT RTLDLASALE VGPGGASRAS VEASGTCNRS VLTIAFQFSY  660
ENHLRESVAA MARSYVRAVM ASVQRVAVAI APSRLGPQIG MKHPPASPEA LTLASWIGRS  720
YRAHTGADIR WSDTEDADSP LALLWKHSDA ILCCSLKPAP MFTFANNAGL DILETTLVNL  780
QDISLEMILD DEGRKALCSE FPKIMQQGFT YLPGGVCKSS MGRQASYEQA VAWKVLSDDD  840
APHCLAFMLV NWTFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein